STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_00796RNA polymerase sigma-70 factor, ECF subfamily. (173 aa)    
Predicted Functional Partners:
SC1_00797
Extracytoplasmic functionalternative sigma factor.
 
     0.928
SC1_00795
Integral membrane protein.
 
     0.863
SC1_02217
Extracytoplasmic functionalternative sigma factor.
 
     0.770
SC1_00794
Putative signal peptide protein.
 
    0.600
SC1_00792
Uncharacterized protein conserved in bacteria, NMA0228-like; Belongs to the UPF0276 family.
 
  
 0.447
rpoC
DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.435
SC1_01785
Cell surface protein.
  
 
  0.430
SC1_00793
Hypothetical protein.
       0.420
rpoB
DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.418
SC1_01782
Hypothetical protein; FIG00637373.
  
 
  0.413
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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