Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SC1_00128 | SC1_00908 | SC1_00128 | SC1_00908 | Membrane protease family protein BA0301. | Rhomboid family serine protease; FIG056164. | 0.747 |
SC1_00128 | ftsH | SC1_00128 | SC1_02280 | Membrane protease family protein BA0301. | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.976 |
SC1_00602 | SC1_00908 | SC1_00602 | SC1_00908 | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | Rhomboid family serine protease; FIG056164. | 0.750 |
SC1_00602 | SC1_03542 | SC1_00602 | SC1_03542 | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | hflC protein; HflC and HflK could regulate a protease. | 0.708 |
SC1_00602 | SC1_03543 | SC1_00602 | SC1_03543 | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | hflK protein. | 0.726 |
SC1_00602 | ftsH | SC1_00602 | SC1_02280 | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.978 |
SC1_00908 | SC1_00128 | SC1_00908 | SC1_00128 | Rhomboid family serine protease; FIG056164. | Membrane protease family protein BA0301. | 0.747 |
SC1_00908 | SC1_00602 | SC1_00908 | SC1_00602 | Rhomboid family serine protease; FIG056164. | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | 0.750 |
SC1_00908 | SC1_03524 | SC1_00908 | SC1_03524 | Rhomboid family serine protease; FIG056164. | N-acetylmuramoyl-L-alanine amidase. | 0.913 |
SC1_00908 | SC1_03542 | SC1_00908 | SC1_03542 | Rhomboid family serine protease; FIG056164. | hflC protein; HflC and HflK could regulate a protease. | 0.779 |
SC1_00908 | SC1_03543 | SC1_00908 | SC1_03543 | Rhomboid family serine protease; FIG056164. | hflK protein. | 0.747 |
SC1_00908 | carB | SC1_00908 | SC1_00906 | Rhomboid family serine protease; FIG056164. | Carbamoyl-phosphate synthase large chain; Belongs to the CarB family. | 0.670 |
SC1_00908 | ftsH | SC1_00908 | SC1_02280 | Rhomboid family serine protease; FIG056164. | Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family. | 0.774 |
SC1_00908 | greA | SC1_00908 | SC1_00907 | Rhomboid family serine protease; FIG056164. | Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides. | 0.828 |
SC1_00908 | tatA | SC1_00908 | SC1_02065 | Rhomboid family serine protease; FIG056164. | Twin-arginine translocation protein TatA; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.923 |
SC1_00908 | tatB | SC1_00908 | SC1_02064 | Rhomboid family serine protease; FIG056164. | Twin-arginine translocation protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation. | 0.916 |
SC1_03524 | SC1_00908 | SC1_03524 | SC1_00908 | N-acetylmuramoyl-L-alanine amidase. | Rhomboid family serine protease; FIG056164. | 0.913 |
SC1_03542 | SC1_00602 | SC1_03542 | SC1_00602 | hflC protein; HflC and HflK could regulate a protease. | Putative stomatin/prohibitin-family membrane protease subunit YbbK. | 0.708 |
SC1_03542 | SC1_00908 | SC1_03542 | SC1_00908 | hflC protein; HflC and HflK could regulate a protease. | Rhomboid family serine protease; FIG056164. | 0.779 |
SC1_03542 | SC1_03543 | SC1_03542 | SC1_03543 | hflC protein; HflC and HflK could regulate a protease. | hflK protein. | 0.999 |
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