Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00922 | SC1_00923 | tonB-dependent receptor. | alfa-L-rhamnosidase. | 0.741 |
SC1_00922 | SC1_00924 | tonB-dependent receptor. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.778 |
SC1_00922 | SC1_00925 | tonB-dependent receptor. | Endo-1,4-beta-xylanase B precursor. | 0.741 |
SC1_00922 | SC1_00926 | tonB-dependent receptor. | Chlorogenate esterase. | 0.741 |
SC1_00922 | SC1_00927 | tonB-dependent receptor. | acetoacetyl-CoA synthetase. | 0.741 |
SC1_00922 | SC1_00928 | tonB-dependent receptor. | Hypothetical protein. | 0.741 |
SC1_00922 | SC1_00929 | tonB-dependent receptor. | Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. | 0.741 |
SC1_00922 | SC1_01608 | tonB-dependent receptor. | tonB-dependent receptor. | 0.701 |
SC1_00922 | SC1_02998 | tonB-dependent receptor. | tonB-dependent receptor. | 0.740 |
SC1_00922 | SC1_04198 | tonB-dependent receptor. | Outer membrane receptor proteins, mostly Fe transport. | 0.667 |
SC1_00923 | SC1_00922 | alfa-L-rhamnosidase. | tonB-dependent receptor. | 0.741 |
SC1_00923 | SC1_00924 | alfa-L-rhamnosidase. | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | 0.823 |
SC1_00923 | SC1_00925 | alfa-L-rhamnosidase. | Endo-1,4-beta-xylanase B precursor. | 0.916 |
SC1_00923 | SC1_00926 | alfa-L-rhamnosidase. | Chlorogenate esterase. | 0.825 |
SC1_00923 | SC1_00927 | alfa-L-rhamnosidase. | acetoacetyl-CoA synthetase. | 0.773 |
SC1_00923 | SC1_00928 | alfa-L-rhamnosidase. | Hypothetical protein. | 0.786 |
SC1_00923 | SC1_00929 | alfa-L-rhamnosidase. | Beta-glucosidase; Belongs to the glycosyl hydrolase 3 family. | 0.830 |
SC1_00924 | SC1_00922 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | tonB-dependent receptor. | 0.778 |
SC1_00924 | SC1_00923 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | alfa-L-rhamnosidase. | 0.823 |
SC1_00924 | SC1_00925 | Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family. | Endo-1,4-beta-xylanase B precursor. | 0.871 |
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