STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_00961Holliday junction DNA helicase; FIG065221. (439 aa)    
Predicted Functional Partners:
SC1_00960
Glycosyltransferase.
  
    0.782
SC1_00963
Mlr3218 protein.
       0.698
SC1_01433
Superfamily II DNA/RNA helicases, SNF2 family.
  
 
 0.663
SC1_00959
Hypothetical protein.
       0.628
SC1_03786
ATP-dependent DNA helicase RecQ.
  
 
 
 0.616
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
 
  
 0.602
nadE
NAD synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
    0.597
SC1_01434
ATP-dependent DNA helicase RecQ.
  
 
 
 0.588
SC1_00962
Hypothetical protein.
       0.559
SC1_00964
Beta-lactamase class C and other penicillin binding proteins.
       0.462
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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