STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_01180Endonuclease/exonuclease/phosphatase family protein. (288 aa)    
Predicted Functional Partners:
SC1_02850
Cysteine desulfurase.
    
   0.902
SC1_01182
Possible conserved lipoprotein LPQP.
 
     0.841
SC1_01181
Beta-glucosidase.
       0.778
SC1_01183
Sugar ABC transporter, sugar permease protein 2 USSDB1D.
       0.707
SC1_01184
Sugar ABC transporter, sugar permease protein 1 USSDB1C.
       0.706
SC1_01185
Inositol transport system sugar-binding protein.
       0.705
SC1_03226
Arabinan endo-1,5-alpha-L-arabinosidase A; Belongs to the glycosyl hydrolase 43 family.
  
     0.695
guaB
Inosine-5'-monophosphate dehydrogenase; Catalyzes the conversion of inosine 5'-phosphate (IMP) to xanthosine 5'-phosphate (XMP), the first committed and rate-limiting step in the de novo synthesis of guanine nucleotides, and therefore plays an important role in the regulation of cell growth. Belongs to the IMPDH/GMPR family.
    
  0.671
SC1_01156
PTS system, N-acetylglucosamine-specific IIA component.
    
 0.665
SC1_03224
Hypothetical protein.
  
    0.654
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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