STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_01186Transcriptional regulator, LacI family. (339 aa)    
Predicted Functional Partners:
SC1_01157
Phosphoenolpyruvate-protein phosphotransferase of PTS system.
   
 0.959
SC1_00994
Glutamate synthase [NADPH] large chain.
    
 
 0.917
SC1_01184
Sugar ABC transporter, sugar permease protein 1 USSDB1C.
 
  
 0.862
SC1_01183
Sugar ABC transporter, sugar permease protein 2 USSDB1D.
 
  
 0.846
SC1_01185
Inositol transport system sugar-binding protein.
 
  
 0.839
SC1_01181
Beta-glucosidase.
   
 0.692
SC1_01156
PTS system, N-acetylglucosamine-specific IIA component.
    
 0.681
SC1_01187
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; TC 3.A.1.1.3; Belongs to the ABC transporter superfamily.
 
     0.639
SC1_01179
Hypothetical protein USSDB1A.
 
     0.618
SC1_01182
Possible conserved lipoprotein LPQP.
       0.613
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.