STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_01230Leucine dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family. (350 aa)    
Predicted Functional Partners:
SC1_00994
Glutamate synthase [NADPH] large chain.
  
 0.999
SC1_04178
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
  
 
 0.959
SC1_01779
Branched-chain alpha-keto acid dehydrogenase, E1 component, alpha subunit.
  
 
  0.904
SC1_01780
Branched-chain alpha-keto acid dehydrogenase, E1 component, beta subunit.
  
 
  0.901
SC1_04033
Ferredoxin-dependent glutamate synthase; Belongs to the glutamate synthase family.
  
 0.890
SC1_03246
Branched-chain amino acid aminotransferase.
  
 
 0.889
ilvD
Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family.
   
 0.880
leuA
2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 2 subfamily.
   
 
 0.877
SC1_04220
Acetoin dehydrogenase E1 component alpha-subunit.
  
 
 0.827
SC1_02426
Pyruvate dehydrogenase E1 component beta subunit; The pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO2.
  
 
 0.789
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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