Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SC1_00514 | SC1_01249 | SC1_00514 | SC1_01249 | Tryptophan halogenase. | Hypothetical protein. | 0.716 |
SC1_00514 | SC1_02500 | SC1_00514 | SC1_02500 | Tryptophan halogenase. | Tryptophan halogenase, putative. | 0.699 |
SC1_00514 | SC1_02735 | SC1_00514 | SC1_02735 | Tryptophan halogenase. | Tryptophan halogenase. | 0.573 |
SC1_00514 | SC1_02737 | SC1_00514 | SC1_02737 | Tryptophan halogenase. | tonB-dependent receptor. | 0.768 |
SC1_00514 | SC1_03978 | SC1_00514 | SC1_03978 | Tryptophan halogenase. | tonB-dependent receptor. | 0.608 |
SC1_00994 | SC1_01249 | SC1_00994 | SC1_01249 | Glutamate synthase [NADPH] large chain. | Hypothetical protein. | 0.794 |
SC1_00994 | SC1_02556 | SC1_00994 | SC1_02556 | Glutamate synthase [NADPH] large chain. | Thiazole biosynthesis protein ThiG. | 0.412 |
SC1_00994 | SC1_04280 | SC1_00994 | SC1_04280 | Glutamate synthase [NADPH] large chain. | Sarcosine oxidase alpha subunit; Belongs to the GcvT family. | 0.955 |
SC1_00994 | thiG | SC1_00994 | SC1_02555 | Glutamate synthase [NADPH] large chain. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.412 |
SC1_01248 | SC1_01249 | SC1_01248 | SC1_01249 | RNA polymerase sigma-70 factor, ECF subfamily. | Hypothetical protein. | 0.779 |
SC1_01249 | SC1_00514 | SC1_01249 | SC1_00514 | Hypothetical protein. | Tryptophan halogenase. | 0.716 |
SC1_01249 | SC1_00994 | SC1_01249 | SC1_00994 | Hypothetical protein. | Glutamate synthase [NADPH] large chain. | 0.794 |
SC1_01249 | SC1_01248 | SC1_01249 | SC1_01248 | Hypothetical protein. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.779 |
SC1_01249 | SC1_02500 | SC1_01249 | SC1_02500 | Hypothetical protein. | Tryptophan halogenase, putative. | 0.732 |
SC1_01249 | SC1_02556 | SC1_01249 | SC1_02556 | Hypothetical protein. | Thiazole biosynthesis protein ThiG. | 0.847 |
SC1_01249 | SC1_02735 | SC1_01249 | SC1_02735 | Hypothetical protein. | Tryptophan halogenase. | 0.724 |
SC1_01249 | SC1_02737 | SC1_01249 | SC1_02737 | Hypothetical protein. | tonB-dependent receptor. | 0.751 |
SC1_01249 | SC1_03978 | SC1_01249 | SC1_03978 | Hypothetical protein. | tonB-dependent receptor. | 0.735 |
SC1_01249 | SC1_04280 | SC1_01249 | SC1_04280 | Hypothetical protein. | Sarcosine oxidase alpha subunit; Belongs to the GcvT family. | 0.991 |
SC1_01249 | thiG | SC1_01249 | SC1_02555 | Hypothetical protein. | Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.847 |
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