Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SC1_01254 | SC1_01257 | SC1_01254 | SC1_01257 | Hypothetical protein. | Cold shock protein CspA. | 0.667 |
SC1_01254 | infA-2 | SC1_01254 | SC1_01256 | Hypothetical protein. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.537 |
SC1_01257 | SC1_01254 | SC1_01257 | SC1_01254 | Cold shock protein CspA. | Hypothetical protein. | 0.667 |
SC1_01257 | SC1_01433 | SC1_01257 | SC1_01433 | Cold shock protein CspA. | Superfamily II DNA/RNA helicases, SNF2 family. | 0.925 |
SC1_01257 | infA-2 | SC1_01257 | SC1_01256 | Cold shock protein CspA. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.774 |
SC1_01257 | rplC | SC1_01257 | SC1_04066 | Cold shock protein CspA. | LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.614 |
SC1_01257 | rplS | SC1_01257 | SC1_03361 | Cold shock protein CspA. | LSU ribosomal protein L19p; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site. | 0.734 |
SC1_01257 | rplT | SC1_01257 | SC1_04199 | Cold shock protein CspA. | LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.714 |
SC1_01257 | rpmA | SC1_01257 | SC1_03400 | Cold shock protein CspA. | LSU ribosomal protein L27p; Belongs to the bacterial ribosomal protein bL27 family. | 0.712 |
SC1_01257 | rpoA | SC1_01257 | SC1_00435 | Cold shock protein CspA. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.743 |
SC1_01257 | rpoB | SC1_01257 | SC1_02572 | Cold shock protein CspA. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.769 |
SC1_01257 | rpoZ | SC1_01257 | SC1_02284 | Cold shock protein CspA. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.771 |
SC1_01433 | SC1_01257 | SC1_01433 | SC1_01257 | Superfamily II DNA/RNA helicases, SNF2 family. | Cold shock protein CspA. | 0.925 |
SC1_01433 | infA-2 | SC1_01433 | SC1_01256 | Superfamily II DNA/RNA helicases, SNF2 family. | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | 0.408 |
SC1_01433 | rplC | SC1_01433 | SC1_04066 | Superfamily II DNA/RNA helicases, SNF2 family. | LSU ribosomal protein L3p; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.951 |
SC1_01433 | rplT | SC1_01433 | SC1_04199 | Superfamily II DNA/RNA helicases, SNF2 family. | LSU ribosomal protein L20p; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit. | 0.457 |
SC1_01433 | rpoA | SC1_01433 | SC1_00435 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.998 |
SC1_01433 | rpoB | SC1_01433 | SC1_02572 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.997 |
SC1_01433 | rpoZ | SC1_01433 | SC1_02284 | Superfamily II DNA/RNA helicases, SNF2 family. | DNA-directed RNA polymerase omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.995 |
infA-2 | SC1_01254 | SC1_01256 | SC1_01254 | Translation initiation factor 1; One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre-initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initiation complex. | Hypothetical protein. | 0.537 |
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