Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00980 | SC1_01375 | Transcriptional regulatory protein. | Autoinducer synthesis protein LuxI. | 0.795 |
SC1_01345 | SC1_01375 | Transcriptional regulatory protein. | Autoinducer synthesis protein LuxI. | 0.737 |
SC1_01374 | SC1_01375 | Transcriptional activator protein LuxR. | Autoinducer synthesis protein LuxI. | 0.920 |
SC1_01374 | SC1_01376 | Transcriptional activator protein LuxR. | Hypothetical protein. | 0.624 |
SC1_01374 | SC1_01377 | Transcriptional activator protein LuxR. | Hypothetical protein. | 0.441 |
SC1_01374 | SC1_01595 | Transcriptional activator protein LuxR. | Sensory box sensor histidine kinase/response regulator. | 0.727 |
SC1_01374 | SC1_02336 | Transcriptional activator protein LuxR. | Hypothetical protein; FIG01097037. | 0.515 |
SC1_01374 | SC1_03552 | Transcriptional activator protein LuxR. | Hypothetical protein. | 0.451 |
SC1_01375 | SC1_00980 | Autoinducer synthesis protein LuxI. | Transcriptional regulatory protein. | 0.795 |
SC1_01375 | SC1_01345 | Autoinducer synthesis protein LuxI. | Transcriptional regulatory protein. | 0.737 |
SC1_01375 | SC1_01374 | Autoinducer synthesis protein LuxI. | Transcriptional activator protein LuxR. | 0.920 |
SC1_01375 | SC1_01376 | Autoinducer synthesis protein LuxI. | Hypothetical protein. | 0.763 |
SC1_01375 | SC1_01377 | Autoinducer synthesis protein LuxI. | Hypothetical protein. | 0.579 |
SC1_01375 | SC1_01595 | Autoinducer synthesis protein LuxI. | Sensory box sensor histidine kinase/response regulator. | 0.575 |
SC1_01375 | SC1_02336 | Autoinducer synthesis protein LuxI. | Hypothetical protein; FIG01097037. | 0.744 |
SC1_01375 | SC1_02644 | Autoinducer synthesis protein LuxI. | Regulatory protein, LuxR. | 0.489 |
SC1_01375 | SC1_03371 | Autoinducer synthesis protein LuxI. | Diguanylate cyclase/phosphodiesterase. | 0.508 |
SC1_01375 | SC1_03552 | Autoinducer synthesis protein LuxI. | Hypothetical protein. | 0.737 |
SC1_01376 | SC1_01374 | Hypothetical protein. | Transcriptional activator protein LuxR. | 0.624 |
SC1_01376 | SC1_01375 | Hypothetical protein. | Autoinducer synthesis protein LuxI. | 0.763 |
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