STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_01407Short chain oxidoreductase. (260 aa)    
Predicted Functional Partners:
SC1_01406
Threonine dehydrogenase and related Zn-dependent dehydrogenases.
 
 
  0.883
SC1_01405
Hypothetical protein.
 
     0.860
SC1_00994
Glutamate synthase [NADPH] large chain.
    
  0.759
SC1_01575
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.738
SC1_02363
Malonyl CoA-acyl carrier protein transacylase.
  
 0.715
SC1_00368
3-oxoacyl-[acyl-carrier protein] reductase.
  
 
  0.651
SC1_03186
Acetoin(diacetyl) reductase.
  
 
  0.650
SC1_04302
Oxidoreductase, short chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
 
 0.648
SC1_00954
Short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
  
  0.630
SC1_00402
folM Alternative dihydrofolate reductase 1.
  
 
  0.611
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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