STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_01409Aminomethyltransferase. (192 aa)    
Predicted Functional Partners:
SC1_01386
Hypothetical protein; FIG00802950.
     0.938
SC1_00994
Glutamate synthase [NADPH] large chain.
    
  0.862
gatA
aspartyl-tRNA(Asn) amidotransferase subunit A; Allows the formation of correctly charged Gln-tRNA(Gln) through the transamidation of misacylated Glu-tRNA(Gln) in organisms which lack glutaminyl-tRNA synthetase. The reaction takes place in the presence of glutamine and ATP through an activated gamma-phospho-Glu- tRNA(Gln).
    
 0.699
SC1_02558
Biotin carboxyl carrier protein of acetyl-CoA carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
    
  0.618
SC1_01611
aspartyl-tRNA(Asn) amidotransferase subunit A.
    
 0.612
SC1_04280
Sarcosine oxidase alpha subunit; Belongs to the GcvT family.
  
  
  0.600
SC1_01410
Putative hypothetical protein.
 
     0.582
glsA
Glutaminase; Belongs to the glutaminase family.
  
  
  0.526
SC1_01903
Biotin carboxylase.
    
 0.453
SC1_02191
methylcrotonyl-CoA carboxylase biotin-containing subunit.
    
 0.453
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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