STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_02084Fumarylacetoacetase. (333 aa)    
Predicted Functional Partners:
SC1_01719
Maleylacetoacetate isomerase.
 
 
 0.968
fumC
Fumarate hydratase class II; Involved in the TCA cycle. Catalyzes the stereospecific interconversion of fumarate to L-malate; Belongs to the class-II fumarase/aspartase family. Fumarase subfamily.
   
  0.889
SC1_00376
Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 
  0.882
SC1_00374
Succinate dehydrogenase cytochrome b-556 subunit.
   
 
  0.876
SC1_00375
Succinate dehydrogenase hydrophobic membrane anchor protein.
   
 
  0.876
SC1_03298
Succinate dehydrogenase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
  
 
  0.876
SC1_00116
4-hydroxyphenylpyruvate dioxygenase.
 
  
 0.821
SC1_02926
2-keto-4-pentenoate hydratase.
   
 
  0.660
SC1_02929
4-oxalocrotonate decarboxylase.
   
 
  0.660
SC1_02833
2-hydroxymuconic semialdehyde hydrolase.
   
 
  0.605
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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