STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_02114ABC-type multidrug transport system, permease component. (290 aa)    
Predicted Functional Partners:
SC1_03764
ABC transporter, ATP-binding protein.
 
 0.931
SC1_01628
ABC-type multidrug transport system, ATPase component.
 
 0.927
SC1_02115
gcrA cell cycle regulator.
       0.696
SC1_01187
Glycerol-3-phosphate ABC transporter, ATP-binding protein UgpC; TC 3.A.1.1.3; Belongs to the ABC transporter superfamily.
  
 
 0.631
SC1_00058
Type I secretion system ATPase, LssB family LapB.
  
 
 0.595
SC1_00212
Transport ATP-binding protein CydCD.
  
 
 0.595
SC1_01184
Sugar ABC transporter, sugar permease protein 1 USSDB1C.
     
 0.567
SC1_01183
Sugar ABC transporter, sugar permease protein 2 USSDB1D.
     
 0.559
ctaA
Heme A synthase, cytochrome oxidase biogenesis protein Cox15-CtaA; Catalyzes the oxidation of the C8 methyl side group on heme O porphyrin ring into a formyl group; Belongs to the COX15/CtaA family. Type 2 subfamily.
    
 0.559
SC1_04308
CAAX amino terminal protease family protein, microcystin degrading enzyme MlrA.
   
  
 0.551
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.