Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SC1_02119 | SC1_02120 | SC1_02119 | SC1_02120 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Hypothetical protein. | 0.773 |
SC1_02119 | SC1_02121 | SC1_02119 | SC1_02121 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Beta lactamase-related protein. | 0.773 |
SC1_02119 | SC1_02680 | SC1_02119 | SC1_02680 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.512 |
SC1_02119 | SC1_03076 | SC1_02119 | SC1_03076 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily. | 0.403 |
SC1_02119 | SC1_03483 | SC1_02119 | SC1_03483 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.400 |
SC1_02119 | parE | SC1_02119 | SC1_02118 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.548 |
SC1_02119 | rpoB | SC1_02119 | SC1_02572 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.418 |
SC1_02119 | rpoC | SC1_02119 | SC1_02571 | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.435 |
SC1_02120 | SC1_02119 | SC1_02120 | SC1_02119 | Hypothetical protein. | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.773 |
SC1_02120 | SC1_02121 | SC1_02120 | SC1_02121 | Hypothetical protein. | Beta lactamase-related protein. | 0.773 |
SC1_02120 | parE | SC1_02120 | SC1_02118 | Hypothetical protein. | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.548 |
SC1_02121 | SC1_02119 | SC1_02121 | SC1_02119 | Beta lactamase-related protein. | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.773 |
SC1_02121 | SC1_02120 | SC1_02121 | SC1_02120 | Beta lactamase-related protein. | Hypothetical protein. | 0.773 |
SC1_02121 | parE | SC1_02121 | SC1_02118 | Beta lactamase-related protein. | Topoisomerase IV subunit B; Topoisomerase IV is essential for chromosome segregation. It relaxes supercoiled DNA. Performs the decatenation events required during the replication of a circular DNA molecule; Belongs to the type II topoisomerase family. ParE type 1 subfamily. | 0.681 |
SC1_02680 | SC1_02119 | SC1_02680 | SC1_02119 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.512 |
SC1_02680 | SC1_03076 | SC1_02680 | SC1_03076 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily. | 0.629 |
SC1_02680 | SC1_03483 | SC1_02680 | SC1_03483 | RNA polymerase sigma-70 factor, ECF subfamily. | RNA polymerase sigma-70 factor, ECF subfamily. | 0.749 |
SC1_02680 | rpoB | SC1_02680 | SC1_02572 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.418 |
SC1_02680 | rpoC | SC1_02680 | SC1_02571 | RNA polymerase sigma-70 factor, ECF subfamily. | DNA-directed RNA polymerase beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.435 |
SC1_03076 | SC1_02119 | SC1_03076 | SC1_02119 | RNA polymerase sigma-54 factor RpoN; Belongs to the sigma-70 factor family. ECF subfamily. | RNA polymerase ECF-type sigma factor; Belongs to the sigma-70 factor family. ECF subfamily. | 0.403 |
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