Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SC1_02122 | SC1_02127 | SC1_02122 | SC1_02127 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | comA-related protein. | 0.614 |
SC1_02122 | SC1_02129 | SC1_02122 | SC1_02129 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.445 |
SC1_02122 | SC1_02130 | SC1_02122 | SC1_02130 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Glutathione S-transferase. | 0.434 |
SC1_02122 | apaG | SC1_02122 | SC1_02123 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | apaG protein. | 0.852 |
SC1_02122 | leuB | SC1_02122 | SC1_02125 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.838 |
SC1_02122 | metZ | SC1_02122 | SC1_02124 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | O-acetylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.858 |
SC1_02122 | recO | SC1_02122 | SC1_02126 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.625 |
SC1_02122 | uvrC | SC1_02122 | SC1_02128 | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.608 |
SC1_02127 | SC1_02122 | SC1_02127 | SC1_02122 | comA-related protein. | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | 0.614 |
SC1_02127 | SC1_02129 | SC1_02127 | SC1_02129 | comA-related protein. | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | 0.548 |
SC1_02127 | SC1_02130 | SC1_02127 | SC1_02130 | comA-related protein. | Glutathione S-transferase. | 0.534 |
SC1_02127 | apaG | SC1_02127 | SC1_02123 | comA-related protein. | apaG protein. | 0.614 |
SC1_02127 | leuB | SC1_02127 | SC1_02125 | comA-related protein. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.623 |
SC1_02127 | metZ | SC1_02127 | SC1_02124 | comA-related protein. | O-acetylhomoserine sulfhydrylase; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.623 |
SC1_02127 | recO | SC1_02127 | SC1_02126 | comA-related protein. | DNA recombination and repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.779 |
SC1_02127 | uvrC | SC1_02127 | SC1_02128 | comA-related protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.768 |
SC1_02129 | SC1_02122 | SC1_02129 | SC1_02122 | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glycine cleavage system transcriptional activator; Belongs to the LysR transcriptional regulatory family. | 0.445 |
SC1_02129 | SC1_02127 | SC1_02129 | SC1_02127 | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | comA-related protein. | 0.548 |
SC1_02129 | SC1_02130 | SC1_02129 | SC1_02130 | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | Glutathione S-transferase. | 0.752 |
SC1_02129 | apaG | SC1_02129 | SC1_02123 | Oxidoreductase, short-chain dehydrogenase/reductase family; Belongs to the short-chain dehydrogenases/reductases (SDR) family. | apaG protein. | 0.445 |
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