STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_02487Deacetylases, including yeast histone deacetylase and acetoin utilization protein. (335 aa)    
Predicted Functional Partners:
SC1_01433
Superfamily II DNA/RNA helicases, SNF2 family.
    
 0.991
SC1_02808
Hypothetical protein; FIG01097881.
    
 0.981
cobB
NAD-dependent protein deacetylase of SIR2 family; Belongs to the sirtuin family. Class III subfamily.
    
 
 0.927
SC1_00772
Hypothetical protein.
   
 0.841
SC1_02288
Cell division protein FtsH; Belongs to the AAA ATPase family.
   
 0.841
SC1_02485
Esterase/lipase.
   
   0.784
SC1_00242
ABC-type multidrug transport system ATPase component.
   
 0.781
SC1_02486
Transcriptional regulator.
       0.773
SC1_01825
Hypothetical protein; FIG00636565.
    
 0.772
smc
Chromosome partition protein smc; Required for chromosome condensation and partitioning. Belongs to the SMC family.
    
 0.772
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.