STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_02628tonB-dependent receptor. (1023 aa)    
Predicted Functional Partners:
SC1_02627
Hypothetical protein.
       0.816
SC1_03715
Outer membrane receptor proteins, mostly Fe transport.
  
     0.679
dctA
Aerobic C4-dicarboxylate transporter for fumarate, L-malate, D-malate, succunate, aspartate; Responsible for the transport of dicarboxylates such as succinate, fumarate, and malate across the membrane. Belongs to the dicarboxylate/amino acid:cation symporter (DAACS) (TC 2.A.23) family.
       0.649
SC1_01604
pepSY-associated TM helix.
  
     0.622
SC1_03998
Outer membrane receptor proteins, mostly Fe transport.
  
     0.605
SC1_03030
Mlr5283 protein.
  
     0.583
SC1_01605
Hypothetical protein.
  
     0.576
SC1_03451
tonB-dependent receptor.
  
     0.557
SC1_00845
Hypothetical protein.
  
     0.555
SC1_04198
Outer membrane receptor proteins, mostly Fe transport.
  
     0.534
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.