STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_02935Hydroxymethylpyrimidine ABC transporter, substrate-binding component. (346 aa)    
Predicted Functional Partners:
SC1_02933
Hydroxymethylpyrimidine ABC transporter, transmembrane component.
 
 
 0.996
SC1_02932
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component.
 
 
 0.961
SC1_02472
Alkanesulfonates transport system permease protein.
 
 
 0.881
SC1_02928
2-aminomuconate deaminase.
 
     0.804
SC1_02934
Biphenyl-2,3-diol 1,2-dioxygenase.
 
     0.803
ssuB
Alkanesulfonates ABC transporter ATP-binding protein; Part of the ABC transporter complex SsuABC involved in aliphatic sulfonates import. Responsible for energy coupling to the transport system.
  
 
 0.784
SC1_02907
Assimilatory nitrate reductase large subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
    
 0.780
SC1_02936
Fumarylacetoacetate hydrolase family protein.
  
    0.776
SC1_02930
2-aminomuconate semialdehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
  
    0.775
SC1_02937
Membrane protein.
  
    0.775
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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