STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_03187Predicted mannuronate transporter. (427 aa)    
Predicted Functional Partners:
SC1_03188
poly(beta-D-mannuronate) lyase.
 
    0.948
SC1_03189
Alginate lyase precursor.
 
    0.947
SC1_03186
Acetoin(diacetyl) reductase.
 
    0.876
SC1_03183
Transcriptional regulator, GntR family.
 
     0.815
SC1_03190
tonB-dependent receptor.
 
    0.795
SC1_03185
Rhamnogalacturonan acetylesterase.
 
     0.788
SC1_03184
tonB-dependent receptor.
 
    0.763
SC1_01610
Permeases of the major facilitator superfamily.
  
     0.687
SC1_03181
2-dehydro-3-deoxygluconate kinase.
 
    0.539
SC1_00916
L-rhamnose-proton symporter.
  
    0.478
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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