STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_03528TPR domain protein. (604 aa)    
Predicted Functional Partners:
SC1_03529
Outer membrane receptor proteins, mostly Fe transport.
 
     0.892
SC1_03527
27kDa outer membrane protein.
       0.758
SC1_03526
Putative Zn-dependent protease, contains TPR repeats.
 
     0.645
ribB
3,4-dihydroxy-2-butanone 4-phosphate synthase; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
  0.618
SC1_03777
tonB-dependent receptor.
  
     0.531
SC1_00883
Two-component hybrid sensor and regulator.
    
  0.513
SC1_03530
Amino acid transporter.
       0.451
SC1_00445
Peptidase, M23/M37 family.
   
   0.436
SC1_01443
Plasmid-related protein.
   
   0.436
SC1_02998
tonB-dependent receptor.
  
     0.426
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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