Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00234 | SC1_00597 | Gene transfer agent (GTA) ORFG12b. | Transcriptional regulator, TetR family. | 0.691 |
SC1_00234 | SC1_00709 | Gene transfer agent (GTA) ORFG12b. | Hypothetical protein; FIG094713. | 0.529 |
SC1_00234 | SC1_01303 | Gene transfer agent (GTA) ORFG12b. | Flp pilus assembly protein TadD, contains TPR repeat. | 0.448 |
SC1_00234 | SC1_02430 | Gene transfer agent (GTA) ORFG12b. | Hypothetical protein; FIG01097168. | 0.436 |
SC1_00234 | SC1_03557 | Gene transfer agent (GTA) ORFG12b. | Hypothetical protein; FIG00636593. | 0.757 |
SC1_00234 | SC1_03753 | Gene transfer agent (GTA) ORFG12b. | Probable lipoprotein transmembrane. | 0.545 |
SC1_00234 | SC1_04006 | Gene transfer agent (GTA) ORFG12b. | Membrane protein, putative. | 0.404 |
SC1_00597 | SC1_00234 | Transcriptional regulator, TetR family. | Gene transfer agent (GTA) ORFG12b. | 0.691 |
SC1_00597 | SC1_00709 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG094713. | 0.603 |
SC1_00597 | SC1_00939 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG00636030. | 0.429 |
SC1_00597 | SC1_01271 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG00636430. | 0.537 |
SC1_00597 | SC1_01303 | Transcriptional regulator, TetR family. | Flp pilus assembly protein TadD, contains TPR repeat. | 0.528 |
SC1_00597 | SC1_02071 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG00637362. | 0.427 |
SC1_00597 | SC1_02430 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG01097168. | 0.475 |
SC1_00597 | SC1_03557 | Transcriptional regulator, TetR family. | Hypothetical protein; FIG00636593. | 0.755 |
SC1_00597 | SC1_03753 | Transcriptional regulator, TetR family. | Probable lipoprotein transmembrane. | 0.642 |
SC1_00709 | SC1_00234 | Hypothetical protein; FIG094713. | Gene transfer agent (GTA) ORFG12b. | 0.529 |
SC1_00709 | SC1_00597 | Hypothetical protein; FIG094713. | Transcriptional regulator, TetR family. | 0.603 |
SC1_00709 | SC1_00939 | Hypothetical protein; FIG094713. | Hypothetical protein; FIG00636030. | 0.731 |
SC1_00709 | SC1_01271 | Hypothetical protein; FIG094713. | Hypothetical protein; FIG00636430. | 0.774 |
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