Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
SC1_00168 | SC1_01926 | long-chain-fatty-acid--CoA ligase. | butyryl-CoA dehydrogenase. | 0.906 |
SC1_00168 | SC1_02106 | long-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor. | 0.676 |
SC1_00168 | SC1_02645 | long-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase. | 0.731 |
SC1_00168 | SC1_03885 | long-chain-fatty-acid--CoA ligase. | 2-deoxy-D-gluconate 3-dehydrogenase. | 0.426 |
SC1_00168 | SC1_03886 | long-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase family protein. | 0.784 |
SC1_00168 | SC1_03887 | long-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor. | 0.905 |
SC1_00168 | SC1_03897 | long-chain-fatty-acid--CoA ligase. | enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.725 |
SC1_00168 | SC1_04295 | long-chain-fatty-acid--CoA ligase. | enoyl-CoA hydratase. | 0.725 |
SC1_00168 | SC1_04303 | long-chain-fatty-acid--CoA ligase. | butyryl-CoA dehydrogenase. | 0.755 |
SC1_01844 | SC1_01926 | medium-chain-fatty-acid--CoA ligase. | butyryl-CoA dehydrogenase. | 0.888 |
SC1_01844 | SC1_02106 | medium-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor. | 0.676 |
SC1_01844 | SC1_02645 | medium-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase. | 0.701 |
SC1_01844 | SC1_03886 | medium-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase family protein. | 0.798 |
SC1_01844 | SC1_03887 | medium-chain-fatty-acid--CoA ligase. | acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor. | 0.906 |
SC1_01844 | SC1_03897 | medium-chain-fatty-acid--CoA ligase. | enoyl-CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family. | 0.725 |
SC1_01844 | SC1_04295 | medium-chain-fatty-acid--CoA ligase. | enoyl-CoA hydratase. | 0.725 |
SC1_01844 | SC1_04303 | medium-chain-fatty-acid--CoA ligase. | butyryl-CoA dehydrogenase. | 0.625 |
SC1_01926 | SC1_00168 | butyryl-CoA dehydrogenase. | long-chain-fatty-acid--CoA ligase. | 0.906 |
SC1_01926 | SC1_01844 | butyryl-CoA dehydrogenase. | medium-chain-fatty-acid--CoA ligase. | 0.888 |
SC1_01926 | SC1_03886 | butyryl-CoA dehydrogenase. | acyl-CoA dehydrogenase family protein. | 0.784 |
page 1 of 4