STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_03975Starvation sensing protein RspA; Belongs to the mandelate racemase/muconate lactonizing enzyme family. (403 aa)    
Predicted Functional Partners:
SC1_03908
D-mannonate oxidoreductase.
 
  
 0.949
SC1_03920
2-deoxy-D-gluconate 3-dehydrogenase.
  
  
  0.882
SC1_03912
Altronate dehydratase.
 
  
 0.881
SC1_03181
2-dehydro-3-deoxygluconate kinase.
 
  
  0.818
SC1_03919
2-dehydro-3-deoxygluconate kinase.
 
  
  0.817
SC1_03974
Hypothetical protein.
       0.788
SC1_03973
Predicted D-glucarate or D-galactorate regulator, GntR family.
 
   
 0.743
uxaC
Uronate isomerase.
 
   
 0.688
SC1_03117
Pyruvate kinase; Belongs to the pyruvate kinase family.
     
 0.620
SC1_00132
Gluconolactonase.
 
  
 0.588
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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