STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_04131Ferrous iron transport protein B. (620 aa)    
Predicted Functional Partners:
SC1_04130
Fe2+ transport system protein A.
  
  
 0.989
SC1_04129
Hypothetical protein; RIKEN cDNA 2310005O14.
     
 0.743
SC1_04128
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.737
SC1_04132
Single-stranded DNA-binding protein.
       0.723
SC1_04133
Hypothetical protein; FIG00636596.
       0.627
SC1_00361
tonB-dependent receptor.
     
 0.585
SC1_04127
N-ethylmaleimide reductase.
       0.533
SC1_00302
Para-aminobenzoate synthase, aminase component.
     
 0.476
SC1_00090
Cystathionine beta-lyase.
     
 0.428
SC1_00994
Glutamate synthase [NADPH] large chain.
      
 0.410
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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