STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_04167D-amino acid dehydrogenase small subunit. (424 aa)    
Predicted Functional Partners:
SC1_04280
Sarcosine oxidase alpha subunit; Belongs to the GcvT family.
  
 0.991
SC1_04166
1-pyrroline-4-hydroxy-2-carboxylate deaminase; Belongs to the DapA family.
 
  
  0.972
SC1_04165
4-hydroxyproline epimerase; Belongs to the proline racemase family.
 
  
  0.952
SC1_04168
Predicted 4-hydroxyproline dipeptidase; Belongs to the peptidase M24B family.
 
 
  0.897
SC1_01216
Hypothetical protein; Not a Proline racemase, nor 4-hydroxyproline epimerase [missing catalytic residues]; Belongs to the proline racemase family.
 
  
  0.862
thiG
Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
  
 
 0.847
SC1_02556
Thiazole biosynthesis protein ThiG.
  
 
 0.847
SC1_00116
4-hydroxyphenylpyruvate dioxygenase.
   
 
  0.802
SC1_00994
Glutamate synthase [NADPH] large chain.
  
 
 0.794
SC1_04164
Transcriptional regulator, GntR family.
 
    0.788
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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