STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SC1_04317phenylacetate-CoA oxygenase, PaaG subunit. (328 aa)    
Predicted Functional Partners:
SC1_04318
phenylacetate-CoA oxygenase, PaaI subunit.
 0.999
SC1_04320
phenylacetate-CoA oxygenase/reductase, PaaK subunit.
 
 0.970
SC1_04315
enoyl-CoA hydratase.
 
 
 0.920
SC1_04314
Aldehyde dehydrogenase, PaaZ.
 
  
 0.913
SC1_01670
enoyl-CoA hydratase.
 
 
 0.886
SC1_01925
enoyl-CoA hydratase.
  
 
 0.806
SC1_02851
paaD-like protein; Involved in Fe-S cluster assembly.
  
 
 0.751
SC1_00459
enoyl-CoA hydratase.
  
 
 0.732
SC1_03218
enoyl-CoA hydratase.
  
 
 0.732
SC1_03056
Flavodoxin reductases (ferredoxin-NADPH reductases) family 1.
  
 0.683
Your Current Organism:
Sphingopyxis sp. C1
NCBI taxonomy Id: 262667
Other names: S. sp. C-1, Sphingopyxis sp. C-1
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