Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_00427 | F933_00428 | GCA_000931715_00709 | GCA_000931715_00708 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.997 |
F933_00427 | F933_00429 | GCA_000931715_00709 | GCA_000931715_00707 | Unannotated protein. | Unannotated protein. | 0.866 |
F933_00427 | F933_00431 | GCA_000931715_00709 | GCA_000931715_00705 | Unannotated protein. | Unannotated protein. | 0.928 |
F933_00427 | F933_00433 | GCA_000931715_00709 | GCA_000931715_00703 | Unannotated protein. | Unannotated protein. | 0.479 |
F933_00427 | F933_00434 | GCA_000931715_00709 | GCA_000931715_00702 | Unannotated protein. | Unannotated protein. | 0.467 |
F933_00427 | F933_00435 | GCA_000931715_00709 | GCA_000931715_00701 | Unannotated protein. | Unannotated protein. | 0.594 |
F933_00427 | cysS | GCA_000931715_00709 | GCA_000931715_00711 | Unannotated protein. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.597 |
F933_00427 | lptA | GCA_000931715_00709 | GCA_000931715_00706 | Unannotated protein. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.809 |
F933_00428 | F933_00427 | GCA_000931715_00708 | GCA_000931715_00709 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.997 |
F933_00428 | F933_00429 | GCA_000931715_00708 | GCA_000931715_00707 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.885 |
F933_00428 | F933_00431 | GCA_000931715_00708 | GCA_000931715_00705 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.891 |
F933_00428 | F933_00433 | GCA_000931715_00708 | GCA_000931715_00703 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.467 |
F933_00428 | F933_00434 | GCA_000931715_00708 | GCA_000931715_00702 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.467 |
F933_00428 | F933_00435 | GCA_000931715_00708 | GCA_000931715_00701 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.594 |
F933_00428 | F933_02079 | GCA_000931715_00708 | GCA_000931715_00841 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein. | 0.473 |
F933_00428 | cysS | GCA_000931715_00708 | GCA_000931715_00711 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein; Belongs to the class-I aminoacyl-tRNA synthetase family. | 0.597 |
F933_00428 | lptA | GCA_000931715_00708 | GCA_000931715_00706 | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Unannotated protein; Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm. | 0.826 |
F933_00429 | F933_00427 | GCA_000931715_00707 | GCA_000931715_00709 | Unannotated protein. | Unannotated protein. | 0.866 |
F933_00429 | F933_00428 | GCA_000931715_00707 | GCA_000931715_00708 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.885 |
F933_00429 | F933_00431 | GCA_000931715_00707 | GCA_000931715_00705 | Unannotated protein. | Unannotated protein. | 0.998 |
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