Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_00278 | nrdR | GCA_000931715_01803 | GCA_000931715_00850 | Unannotated protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Unannotated protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.533 |
F933_00278 | polA | GCA_000931715_01803 | GCA_000931715_01363 | Unannotated protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Unannotated protein; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.762 |
F933_00278 | ribB-2 | GCA_000931715_01803 | GCA_000931715_02049 | Unannotated protein; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen. | Unannotated protein; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family. | 0.930 |
F933_02066 | F933_02067 | GCA_000931715_00854 | GCA_000931715_00853 | Unannotated protein. | Unannotated protein. | 0.645 |
F933_02066 | F933_02068 | GCA_000931715_00854 | GCA_000931715_00852 | Unannotated protein. | Unannotated protein; Belongs to the P(II) protein family. | 0.411 |
F933_02066 | nrdR | GCA_000931715_00854 | GCA_000931715_00850 | Unannotated protein. | Unannotated protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.439 |
F933_02067 | F933_02066 | GCA_000931715_00853 | GCA_000931715_00854 | Unannotated protein. | Unannotated protein. | 0.645 |
F933_02067 | F933_02068 | GCA_000931715_00853 | GCA_000931715_00852 | Unannotated protein. | Unannotated protein; Belongs to the P(II) protein family. | 0.680 |
F933_02067 | F933_02069 | GCA_000931715_00853 | GCA_000931715_00851 | Unannotated protein. | Unannotated protein. | 0.567 |
F933_02067 | F933_02071 | GCA_000931715_00853 | GCA_000931715_00849 | Unannotated protein. | Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.534 |
F933_02067 | F933_02074 | GCA_000931715_00853 | GCA_000931715_00846 | Unannotated protein. | Unannotated protein. | 0.415 |
F933_02067 | nrdR | GCA_000931715_00853 | GCA_000931715_00850 | Unannotated protein. | Unannotated protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.586 |
F933_02068 | F933_02066 | GCA_000931715_00852 | GCA_000931715_00854 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein. | 0.411 |
F933_02068 | F933_02067 | GCA_000931715_00852 | GCA_000931715_00853 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein. | 0.680 |
F933_02068 | F933_02069 | GCA_000931715_00852 | GCA_000931715_00851 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein. | 0.998 |
F933_02068 | F933_02071 | GCA_000931715_00852 | GCA_000931715_00849 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family. | 0.665 |
F933_02068 | F933_02072 | GCA_000931715_00852 | GCA_000931715_00848 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein. | 0.651 |
F933_02068 | F933_02074 | GCA_000931715_00852 | GCA_000931715_00846 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein. | 0.545 |
F933_02068 | nrdR | GCA_000931715_00852 | GCA_000931715_00850 | Unannotated protein; Belongs to the P(II) protein family. | Unannotated protein; Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes; Belongs to the NrdR family. | 0.658 |
F933_02069 | F933_02067 | GCA_000931715_00851 | GCA_000931715_00853 | Unannotated protein. | Unannotated protein. | 0.567 |
page 1 of 4