Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_00459 | F933_00815 | GCA_000931715_00462 | GCA_000931715_03358 | Unannotated protein; Belongs to the peptidase S11 family. | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | 0.436 |
F933_00459 | F933_01506 | GCA_000931715_00462 | GCA_000931715_01621 | Unannotated protein; Belongs to the peptidase S11 family. | Unannotated protein. | 0.918 |
F933_00459 | F933_03202 | GCA_000931715_00462 | GCA_000931715_02222 | Unannotated protein; Belongs to the peptidase S11 family. | Unannotated protein; Belongs to the peptidase S11 family. | 0.929 |
F933_00815 | F933_00459 | GCA_000931715_03358 | GCA_000931715_00462 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein; Belongs to the peptidase S11 family. | 0.436 |
F933_00815 | F933_01506 | GCA_000931715_03358 | GCA_000931715_01621 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein. | 0.954 |
F933_00815 | mrdA | GCA_000931715_03358 | GCA_000931715_01046 | Unannotated protein; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross- linking of the peptide subunits). | Unannotated protein; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily. | 0.702 |
F933_01501 | F933_01502 | GCA_000931715_01626 | GCA_000931715_01625 | Unannotated protein. | Unannotated protein. | 0.999 |
F933_01501 | F933_01503 | GCA_000931715_01626 | GCA_000931715_01624 | Unannotated protein. | Unannotated protein. | 0.989 |
F933_01501 | F933_01504 | GCA_000931715_01626 | GCA_000931715_01623 | Unannotated protein. | Unannotated protein. | 0.996 |
F933_01501 | F933_01505 | GCA_000931715_01626 | GCA_000931715_01622 | Unannotated protein. | Unannotated protein. | 0.991 |
F933_01501 | F933_01506 | GCA_000931715_01626 | GCA_000931715_01621 | Unannotated protein. | Unannotated protein. | 0.750 |
F933_01501 | aroK | GCA_000931715_01626 | GCA_000931715_01627 | Unannotated protein. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.726 |
F933_01502 | F933_01501 | GCA_000931715_01625 | GCA_000931715_01626 | Unannotated protein. | Unannotated protein. | 0.999 |
F933_01502 | F933_01503 | GCA_000931715_01625 | GCA_000931715_01624 | Unannotated protein. | Unannotated protein. | 0.996 |
F933_01502 | F933_01504 | GCA_000931715_01625 | GCA_000931715_01623 | Unannotated protein. | Unannotated protein. | 0.997 |
F933_01502 | F933_01505 | GCA_000931715_01625 | GCA_000931715_01622 | Unannotated protein. | Unannotated protein. | 0.989 |
F933_01502 | F933_01506 | GCA_000931715_01625 | GCA_000931715_01621 | Unannotated protein. | Unannotated protein. | 0.728 |
F933_01502 | aroK | GCA_000931715_01625 | GCA_000931715_01627 | Unannotated protein. | Unannotated protein; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.778 |
F933_01503 | F933_01501 | GCA_000931715_01624 | GCA_000931715_01626 | Unannotated protein. | Unannotated protein. | 0.989 |
F933_01503 | F933_01502 | GCA_000931715_01624 | GCA_000931715_01625 | Unannotated protein. | Unannotated protein. | 0.996 |
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