Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_00822 | F933_01485 | GCA_000931715_03351 | GCA_000931715_01642 | Unannotated protein. | Unannotated protein. | 0.474 |
F933_00822 | F933_02012 | GCA_000931715_03351 | GCA_000931715_00908 | Unannotated protein. | Unannotated protein. | 0.474 |
F933_00822 | ilvA | GCA_000931715_03351 | GCA_000931715_03122 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.516 |
F933_00822 | rpoZ | GCA_000931715_03351 | GCA_000931715_01644 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.490 |
F933_01304 | F933_01485 | GCA_000931715_00677 | GCA_000931715_01642 | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Unannotated protein. | 0.492 |
F933_01304 | F933_02012 | GCA_000931715_00677 | GCA_000931715_00908 | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | Unannotated protein. | 0.492 |
F933_01484 | F933_01485 | GCA_000931715_01643 | GCA_000931715_01642 | Unannotated protein. | Unannotated protein. | 0.704 |
F933_01484 | F933_01486 | GCA_000931715_01643 | GCA_000931715_01641 | Unannotated protein. | Unannotated protein. | 0.611 |
F933_01484 | F933_01487 | GCA_000931715_01643 | GCA_000931715_01640 | Unannotated protein. | Unannotated protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.560 |
F933_01484 | gmk | GCA_000931715_01643 | GCA_000931715_01645 | Unannotated protein. | Unannotated protein; Essential for recycling GMP and indirectly, cGMP. | 0.946 |
F933_01484 | rpoZ | GCA_000931715_01643 | GCA_000931715_01644 | Unannotated protein. | Unannotated protein; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.733 |
F933_01485 | F933_00822 | GCA_000931715_01642 | GCA_000931715_03351 | Unannotated protein. | Unannotated protein. | 0.474 |
F933_01485 | F933_01304 | GCA_000931715_01642 | GCA_000931715_00677 | Unannotated protein. | Unannotated protein; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family. | 0.492 |
F933_01485 | F933_01484 | GCA_000931715_01642 | GCA_000931715_01643 | Unannotated protein. | Unannotated protein. | 0.704 |
F933_01485 | F933_01486 | GCA_000931715_01642 | GCA_000931715_01641 | Unannotated protein. | Unannotated protein. | 0.697 |
F933_01485 | F933_01487 | GCA_000931715_01642 | GCA_000931715_01640 | Unannotated protein. | Unannotated protein; Iron-storage protein, whose ferroxidase center binds Fe(2+) ions, oxidizes them by dioxygen to Fe(3+), and participates in the subsequent Fe(3+) oxide mineral core formation within the central cavity of the protein complex; Belongs to the bacterioferritin family. | 0.599 |
F933_01485 | F933_02012 | GCA_000931715_01642 | GCA_000931715_00908 | Unannotated protein. | Unannotated protein. | 0.482 |
F933_01485 | gmk | GCA_000931715_01642 | GCA_000931715_01645 | Unannotated protein. | Unannotated protein; Essential for recycling GMP and indirectly, cGMP. | 0.674 |
F933_01485 | ilvA | GCA_000931715_01642 | GCA_000931715_03122 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.498 |
F933_01485 | ispH | GCA_000931715_01642 | GCA_000931715_01646 | Unannotated protein. | Unannotated protein; Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP/MEP pathway for isoprenoid precursor biosynthesis. Belongs to the IspH family. | 0.548 |
page 1 of 3