Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_01457 | F933_01458 | GCA_000931715_01670 | GCA_000931715_01669 | Unannotated protein. | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.803 |
F933_01457 | F933_02060 | GCA_000931715_01670 | GCA_000931715_00860 | Unannotated protein. | Unannotated protein. | 0.527 |
F933_01458 | F933_01457 | GCA_000931715_01669 | GCA_000931715_01670 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.803 |
F933_01458 | F933_01459 | GCA_000931715_01669 | GCA_000931715_01668 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.722 |
F933_01458 | F933_01460 | GCA_000931715_01669 | GCA_000931715_01667 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.630 |
F933_01458 | F933_02060 | GCA_000931715_01669 | GCA_000931715_00860 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.587 |
F933_01458 | F933_02989 | GCA_000931715_01669 | GCA_000931715_02637 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.597 |
F933_01458 | gpmI | GCA_000931715_01669 | GCA_000931715_00840 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate. | 0.908 |
F933_01458 | rplB | GCA_000931715_01669 | GCA_000931715_00630 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity; this is somewhat controversial. Makes several contacts with the 16S rRNA in the 70S ribosome. Belongs to the universal ribosomal protein uL2 family. | 0.554 |
F933_01458 | rplF | GCA_000931715_01669 | GCA_000931715_00618 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family. | 0.583 |
F933_01458 | rplQ | GCA_000931715_01669 | GCA_000931715_00607 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein. | 0.540 |
F933_01458 | serC | GCA_000931715_01669 | GCA_000931715_02264 | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily. | 0.989 |
F933_01459 | F933_01458 | GCA_000931715_01668 | GCA_000931715_01669 | Unannotated protein. | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.722 |
F933_01459 | F933_01460 | GCA_000931715_01668 | GCA_000931715_01667 | Unannotated protein. | Unannotated protein. | 0.774 |
F933_01460 | F933_01458 | GCA_000931715_01667 | GCA_000931715_01669 | Unannotated protein. | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.630 |
F933_01460 | F933_01459 | GCA_000931715_01667 | GCA_000931715_01668 | Unannotated protein. | Unannotated protein. | 0.774 |
F933_02060 | F933_01457 | GCA_000931715_00860 | GCA_000931715_01670 | Unannotated protein. | Unannotated protein. | 0.527 |
F933_02060 | F933_01458 | GCA_000931715_00860 | GCA_000931715_01669 | Unannotated protein. | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.587 |
F933_02060 | F933_02989 | GCA_000931715_00860 | GCA_000931715_02637 | Unannotated protein. | Unannotated protein. | 0.755 |
F933_02989 | F933_01458 | GCA_000931715_02637 | GCA_000931715_01669 | Unannotated protein. | Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. | 0.597 |
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