Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_01389 | F933_01534 | GCA_000931715_00637 | GCA_000931715_01593 | Unannotated protein. | Unannotated protein. | 0.941 |
F933_01389 | F933_01945 | GCA_000931715_00637 | GCA_000931715_01163 | Unannotated protein. | Unannotated protein. | 0.952 |
F933_01389 | F933_02089 | GCA_000931715_00637 | GCA_000931715_00831 | Unannotated protein. | Unannotated protein. | 0.934 |
F933_01389 | F933_02533 | GCA_000931715_00637 | GCA_000931715_00046 | Unannotated protein. | Unannotated protein. | 0.530 |
F933_01389 | F933_02994 | GCA_000931715_00637 | GCA_000931715_02632 | Unannotated protein. | Unannotated protein; Belongs to the methylenetetrahydrofolate reductase family. | 0.795 |
F933_01389 | F933_03183 | GCA_000931715_00637 | GCA_000931715_02241 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.971 |
F933_01389 | ahcY | GCA_000931715_00637 | GCA_000931715_02633 | Unannotated protein. | Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.924 |
F933_01389 | ilvA | GCA_000931715_00637 | GCA_000931715_03122 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.921 |
F933_01389 | metK | GCA_000931715_00637 | GCA_000931715_02895 | Unannotated protein. | Unannotated protein; Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme. | 0.499 |
F933_01389 | metZ | GCA_000931715_00637 | GCA_000931715_03228 | Unannotated protein. | Unannotated protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.934 |
F933_01534 | F933_01389 | GCA_000931715_01593 | GCA_000931715_00637 | Unannotated protein. | Unannotated protein. | 0.941 |
F933_01534 | F933_01945 | GCA_000931715_01593 | GCA_000931715_01163 | Unannotated protein. | Unannotated protein. | 0.940 |
F933_01534 | F933_02089 | GCA_000931715_01593 | GCA_000931715_00831 | Unannotated protein. | Unannotated protein. | 0.932 |
F933_01534 | F933_02994 | GCA_000931715_01593 | GCA_000931715_02632 | Unannotated protein. | Unannotated protein; Belongs to the methylenetetrahydrofolate reductase family. | 0.517 |
F933_01534 | F933_03183 | GCA_000931715_01593 | GCA_000931715_02241 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate. | 0.976 |
F933_01534 | ahcY | GCA_000931715_01593 | GCA_000931715_02633 | Unannotated protein. | Unannotated protein; May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine. | 0.920 |
F933_01534 | ilvA | GCA_000931715_01593 | GCA_000931715_03122 | Unannotated protein. | Unannotated protein; Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short-lived. The second step is the nonenzymatic hydrolysis of the enamine/imine intermediates to form 2- ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA. | 0.909 |
F933_01534 | metZ | GCA_000931715_01593 | GCA_000931715_03228 | Unannotated protein. | Unannotated protein; Catalyzes the formation of L-homocysteine from O-succinyl-L- homoserine (OSHS) and hydrogen sulfide. | 0.928 |
F933_01945 | F933_01389 | GCA_000931715_01163 | GCA_000931715_00637 | Unannotated protein. | Unannotated protein. | 0.952 |
F933_01945 | F933_01534 | GCA_000931715_01163 | GCA_000931715_01593 | Unannotated protein. | Unannotated protein. | 0.940 |
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