Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_01427 | F933_02937 | GCA_000931715_01700 | GCA_000931715_02691 | Unannotated protein. | Unannotated protein. | 0.654 |
F933_01427 | rpmB | GCA_000931715_01700 | GCA_000931715_00185 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. | 0.545 |
F933_01427 | rpsN | GCA_000931715_01700 | GCA_000931715_00620 | Unannotated protein. | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.558 |
F933_02937 | F933_01427 | GCA_000931715_02691 | GCA_000931715_01700 | Unannotated protein. | Unannotated protein. | 0.654 |
F933_02937 | F933_02938 | GCA_000931715_02691 | GCA_000931715_02690 | Unannotated protein. | Unannotated protein; Belongs to the Fur family. | 0.769 |
F933_02937 | F933_02939 | GCA_000931715_02691 | GCA_000931715_02689 | Unannotated protein. | Unannotated protein. | 0.732 |
F933_02937 | F933_02942 | GCA_000931715_02691 | GCA_000931715_02686 | Unannotated protein. | Unannotated protein. | 0.581 |
F933_02937 | F933_02943 | GCA_000931715_02691 | GCA_000931715_02685 | Unannotated protein. | Unannotated protein. | 0.605 |
F933_02937 | dksA | GCA_000931715_02691 | GCA_000931715_00821 | Unannotated protein. | Unannotated protein; Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters. Also required for regulation of fis expression. | 0.495 |
F933_02937 | folE2 | GCA_000931715_02691 | GCA_000931715_02688 | Unannotated protein. | Unannotated protein; Converts GTP to 7,8-dihydroneopterin triphosphate. | 0.849 |
F933_02937 | hisI-2 | GCA_000931715_02691 | GCA_000931715_02687 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. | 0.550 |
F933_02937 | rpmB | GCA_000931715_02691 | GCA_000931715_00185 | Unannotated protein. | Unannotated protein; Belongs to the bacterial ribosomal protein bL28 family. | 0.492 |
F933_02937 | rpsN | GCA_000931715_02691 | GCA_000931715_00620 | Unannotated protein. | Unannotated protein; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site; Belongs to the universal ribosomal protein uS14 family. | 0.610 |
F933_02938 | F933_02937 | GCA_000931715_02690 | GCA_000931715_02691 | Unannotated protein; Belongs to the Fur family. | Unannotated protein. | 0.769 |
F933_02938 | F933_02939 | GCA_000931715_02690 | GCA_000931715_02689 | Unannotated protein; Belongs to the Fur family. | Unannotated protein. | 0.773 |
F933_02938 | F933_02942 | GCA_000931715_02690 | GCA_000931715_02686 | Unannotated protein; Belongs to the Fur family. | Unannotated protein. | 0.503 |
F933_02938 | F933_02943 | GCA_000931715_02690 | GCA_000931715_02685 | Unannotated protein; Belongs to the Fur family. | Unannotated protein. | 0.519 |
F933_02938 | folE2 | GCA_000931715_02690 | GCA_000931715_02688 | Unannotated protein; Belongs to the Fur family. | Unannotated protein; Converts GTP to 7,8-dihydroneopterin triphosphate. | 0.567 |
F933_02938 | hisI-2 | GCA_000931715_02690 | GCA_000931715_02687 | Unannotated protein; Belongs to the Fur family. | Unannotated protein; Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP. | 0.560 |
F933_02939 | F933_02937 | GCA_000931715_02689 | GCA_000931715_02691 | Unannotated protein. | Unannotated protein. | 0.732 |
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