Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
F933_00321 | F933_02880 | GCA_000931715_01760 | GCA_000931715_02748 | Unannotated protein. | Unannotated protein. | 0.976 |
F933_00321 | tsaD | GCA_000931715_01760 | GCA_000931715_02658 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.988 |
F933_02877 | F933_02880 | GCA_000931715_02751 | GCA_000931715_02748 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein. | 0.570 |
F933_02877 | F933_02881 | GCA_000931715_02751 | GCA_000931715_02747 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein. | 0.462 |
F933_02877 | miaA | GCA_000931715_02751 | GCA_000931715_02750 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.824 |
F933_02877 | mutL | GCA_000931715_02751 | GCA_000931715_02749 | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.671 |
F933_02880 | F933_00321 | GCA_000931715_02748 | GCA_000931715_01760 | Unannotated protein. | Unannotated protein. | 0.976 |
F933_02880 | F933_02877 | GCA_000931715_02748 | GCA_000931715_02751 | Unannotated protein. | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.570 |
F933_02880 | F933_02881 | GCA_000931715_02748 | GCA_000931715_02747 | Unannotated protein. | Unannotated protein. | 0.740 |
F933_02880 | F933_02882 | GCA_000931715_02748 | GCA_000931715_02746 | Unannotated protein. | Unannotated protein. | 0.651 |
F933_02880 | F933_02883 | GCA_000931715_02748 | GCA_000931715_02745 | Unannotated protein. | Unannotated protein. | 0.605 |
F933_02880 | ddl | GCA_000931715_02748 | GCA_000931715_01978 | Unannotated protein. | Unannotated protein; Cell wall formation. | 0.566 |
F933_02880 | miaA | GCA_000931715_02748 | GCA_000931715_02750 | Unannotated protein. | Unannotated protein; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family. | 0.911 |
F933_02880 | mutL | GCA_000931715_02748 | GCA_000931715_02749 | Unannotated protein. | Unannotated protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex. | 0.881 |
F933_02880 | nnrD | GCA_000931715_02748 | GCA_000931715_00477 | Unannotated protein. | Unannotated protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. In the C-terminal section; belongs to the NnrD/CARKD family. | 0.722 |
F933_02880 | tsaD | GCA_000931715_02748 | GCA_000931715_02658 | Unannotated protein. | Unannotated protein; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family. | 0.896 |
F933_02881 | F933_02877 | GCA_000931715_02747 | GCA_000931715_02751 | Unannotated protein. | Unannotated protein; RNA chaperone that binds small regulatory RNA (sRNAs) and mRNAs to facilitate mRNA translational regulation in response to envelope stress, environmental stress and changes in metabolite concentrations. Also binds with high specificity to tRNAs. Belongs to the Hfq family. | 0.462 |
F933_02881 | F933_02880 | GCA_000931715_02747 | GCA_000931715_02748 | Unannotated protein. | Unannotated protein. | 0.740 |
F933_02881 | F933_02882 | GCA_000931715_02747 | GCA_000931715_02746 | Unannotated protein. | Unannotated protein. | 0.728 |
F933_02881 | F933_02883 | GCA_000931715_02747 | GCA_000931715_02745 | Unannotated protein. | Unannotated protein. | 0.648 |
page 1 of 3