STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0103Putative ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0395;TC:3.A.1.1.2. (285 aa)    
Predicted Functional Partners:
MS53_0104
Putative multiple sugar ABC transporter permease; Identified by sequence similarity; putative; ORF located using Blastx;COG1175;TC:3.A.1.1.2.
 
 0.998
MS53_0105
Putative ABC transporter protein, periplasmic component; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx.
 
 0.998
MS53_0102
Putative ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
 
 0.992
MS53_0330
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
  
 0.950
MS53_0383
Putative glycerol transporter subunit A; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG3839.
  
 0.950
ugpA
ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1175;TC:3.A.1.1.4.
  
 
 0.737
MS53_0384
Putative glycerol transporter subunit B; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG1175;TC:3.A.1.1.16.
  
 
 0.737
MS53_0108
Identified by sequence similarity; putative; ORF located using Blastx;COG0366.
 
  
 0.718
MS53_0107
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1554.
     
 0.507
pgmB
Beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Blastx;COG0637.
       0.502
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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