Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0108Identified by sequence similarity; putative; ORF located using Blastx;COG0366. (547 aa)    
Predicted Functional Partners:
MS53_0423
Putative amino acid permease; Identified by sequence similarity; putative; ORF located using Blastx;COG0531;TC:2.A.3.6.1.
  
 0.887
MS53_0482
Putative amino acid permease; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0531;TC:2.A.3.2.3.
  
 0.887
pgmB
Beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Blastx;COG0637.
  
  
 0.871
MS53_0107
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1554.
  
  
 0.871
ptsG
PTS system, glucose-specific IIABC component; Identified by sequence similarity; putative; ORF located using Blastx;COG1263;TC:4.A.1.1.2.
  
  
 0.790
MS53_0103
Putative ABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0395;TC:3.A.1.1.2.
 
  
 0.722
MS53_0109
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
  
  
 0.682
MS53_0105
Putative ABC transporter protein, periplasmic component; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx.
  
  
 0.649
MS53_0104
Putative multiple sugar ABC transporter permease; Identified by sequence similarity; putative; ORF located using Blastx;COG1175;TC:3.A.1.1.2.
  
  
 0.624
MS53_0102
Putative ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
  
  
 0.606
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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