Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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MS53_0111Putative tRNA (Uracil-5-) -methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx;COG2265; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family. (432 aa)    
Predicted Functional Partners:
trmB
Putative methlytransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
  
  
 0.861
MS53_0112
Identified by sequence similarity; putative; ORF located using Blastx;COG0742.
       0.793
MS53_0110
Putative DNase/RNase endonuclease; Identified by sequence similarity; putative; ORF located using Blastx;COG1525.
       0.773
MS53_0109
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
     
 0.741
pgk
Phosphoglycerate kinase; Identified by sequence similarity; putative; ORF located using Blastx;COG0126.
       0.724
pgmB
Beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Blastx;COG0637.
       0.503
MS53_0107
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1554.
       0.501
MS53_0108
Identified by sequence similarity; putative; ORF located using Blastx;COG0366.
       0.501
MS53_0007
Putative pantothenate metabolism flavoprotein; Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4- phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine; In the C-terminal section; belongs to the PPC synthetase family.
 
   0.459
pheT
Putative phenylalanyl-tRNA synthetase beta chain; Identified by sequence similarity; putative; ORF located using Blastx;COG0072; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
 
  
 0.457
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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