STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmBPutative methlytransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. (205 aa)    
Predicted Functional Partners:
MS53_0111
Putative tRNA (Uracil-5-) -methyltransferase; Identified by sequence similarity; putative; ORF located using Blastx;COG2265; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
  
 0.857
serS
seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
   
 
 0.832
MS53_0112
Identified by sequence similarity; putative; ORF located using Blastx;COG0742.
     
 0.811
MS53_0110
Putative DNase/RNase endonuclease; Identified by sequence similarity; putative; ORF located using Blastx;COG1525.
       0.773
truB
tRNA pseudouridine synthase B; Identified by sequence similarity; putative; ORF located using Blastx;COG0130; Belongs to the pseudouridine synthase TruB family.
  
 
 0.749
MS53_0109
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.732
pgk
Phosphoglycerate kinase; Identified by sequence similarity; putative; ORF located using Blastx;COG0126.
       0.701
pgmB
Beta-phosphoglucomutase; Identified by sequence similarity; putative; ORF located using Blastx;COG0637.
       0.551
MS53_0107
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1554.
       0.509
MS53_0108
Identified by sequence similarity; putative; ORF located using Blastx;COG0366.
       0.501
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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