Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MS53_0186 | MS53_0188 | MS53_0186 | MS53_0188 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Hypothetical protein. | 0.796 |
MS53_0186 | MS53_0189 | MS53_0186 | MS53_0189 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Hypothetical protein. | 0.479 |
MS53_0186 | MS53_0190 | MS53_0186 | MS53_0190 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx;COG4166. | 0.986 |
MS53_0186 | oppB | MS53_0186 | MS53_0184 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2. | 0.998 |
MS53_0186 | oppB-1 | MS53_0186 | MS53_0348 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0601;TC:3.A.1.5.2. | 0.980 |
MS53_0186 | oppC | MS53_0186 | MS53_0185 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.2. | 0.999 |
MS53_0186 | oppC-1 | MS53_0186 | MS53_0347 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.1. | 0.976 |
MS53_0186 | oppD | MS53_0186 | MS53_0187 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide ABC transporter ATP-binding protein OppD; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. | 0.990 |
MS53_0186 | oppD-1 | MS53_0186 | MS53_0346 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. | 0.953 |
MS53_0186 | oppF-1 | MS53_0186 | MS53_0345 | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | Oligopeptide ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:3.A.1.5.1; Belongs to the ABC transporter superfamily. | 0.924 |
MS53_0188 | MS53_0186 | MS53_0188 | MS53_0186 | Hypothetical protein. | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | 0.796 |
MS53_0188 | MS53_0189 | MS53_0188 | MS53_0189 | Hypothetical protein. | Hypothetical protein. | 0.495 |
MS53_0188 | MS53_0190 | MS53_0188 | MS53_0190 | Hypothetical protein. | Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx;COG4166. | 0.530 |
MS53_0188 | oppB | MS53_0188 | MS53_0184 | Hypothetical protein. | Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2. | 0.796 |
MS53_0188 | oppC | MS53_0188 | MS53_0185 | Hypothetical protein. | Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.2. | 0.796 |
MS53_0188 | oppD | MS53_0188 | MS53_0187 | Hypothetical protein. | Oligopeptide ABC transporter ATP-binding protein OppD; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily. | 0.805 |
MS53_0189 | MS53_0186 | MS53_0189 | MS53_0186 | Hypothetical protein. | Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. | 0.479 |
MS53_0189 | MS53_0188 | MS53_0189 | MS53_0188 | Hypothetical protein. | Hypothetical protein. | 0.495 |
MS53_0189 | MS53_0190 | MS53_0189 | MS53_0190 | Hypothetical protein. | Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx;COG4166. | 0.620 |
MS53_0189 | oppB | MS53_0189 | MS53_0184 | Hypothetical protein. | Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2. | 0.479 |
page 1 of 5