STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0186Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily. (585 aa)    
Predicted Functional Partners:
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.2.
 
 0.999
oppB
Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2.
 
 0.998
oppD
Oligopeptide ABC transporter ATP-binding protein OppD; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
 
 
0.990
MS53_0190
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx;COG4166.
 
 
 0.986
oppB-1
Oligopeptide ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0601;TC:3.A.1.5.2.
 
 0.980
oppC-1
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.1.
 
 0.976
oppD-1
Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
 
 
0.953
ecfA2
Putative ABC transporter ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
0.953
ecfA1
Putative ABC transporter atp-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
0.951
oppF-1
Oligopeptide ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
  
  
 
0.924
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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