Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0189Hypothetical protein. (82 aa)    
Predicted Functional Partners:
MS53_0190
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx;COG4166.
       0.620
MS53_0188
Hypothetical protein.
       0.495
oppD
Oligopeptide ABC transporter ATP-binding protein OppD; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
       0.485
oppB
Putative Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0601;TC:3.A.1.5.2.
       0.479
oppC
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.2.
       0.479
MS53_0186
Putative oligopeptide ABC transporter ATP-binding protein OppF; Identified by sequence similarity; putative; ORF located using Blastx;COG1124; Belongs to the ABC transporter superfamily.
       0.479
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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