Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
vlhAPhase-variable hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx. (569 aa)    
Predicted Functional Partners:
MS53_0269
Putative phase-variable hemagglutinin; Identified by sequence similarity; putative; ORF located using Blastx.
       0.709
MS53_0284
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
      
 0.618
oppF-1
Oligopeptide ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
      
 0.618
MS53_0526
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG3611.
      
 0.604
thrS
threonyl-tRNA synthetase; Identified by sequence similarity; putative; ORF located using Blastx;COG0441; Belongs to the class-II aminoacyl-tRNA synthetase family.
      
 0.568
trpS
tryptophanyl-tRNA synthetase; Catalyzes the attachment of tryptophan to tRNA(Trp). Belongs to the class-I aminoacyl-tRNA synthetase family.
      
 0.514
gapA
Glyceraldehyde 3-phosphate dehydrogenase; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0057.
       0.450
pdhB
Pyruvate dehydrogenase E1 component, beta subunit; Identified by sequence similarity; putative; ORF located using Blastx;COG0022.
     
 0.414
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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