STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nadDConserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD). (361 aa)    
Predicted Functional Partners:
MS53_0324
Hypothetical protein.
     
 0.841
dinP
DNA polymerase IV; Identified by sequence similarity; putative; ORF located using Blastx;COG0389.
  
    0.838
nifU
Nitrogen fixation protein NifU; Identified by sequence similarity; putative; ORF located using Blastx;COG0822.
       0.836
nifS
Nitrogen fixation protein NifS; Identified by sequence similarity; putative; ORF located using Blastx;COG0520.
       0.836
rluB
Ribosomal large subunit pseudouridine synthase B; Identified by sequence similarity; putative; ORF located using Blastx;COG1187; Belongs to the pseudouridine synthase RsuA family.
  
    0.830
MS53_0325
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
       0.794
MS53_0323
Hypothetical protein.
       0.773
MS53_0664
Putative GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
  
    0.733
gyrA
DNA gyrase subunit A; Identified by sequence similarity; putative; ORF located using Glimmer;GeneMark;Blastx;COG0188.
  
  
 0.681
coaD
Putative pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
 
   
 0.629
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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