Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
dinPDNA polymerase IV; Identified by sequence similarity; putative; ORF located using Blastx;COG0389. (413 aa)    
Predicted Functional Partners:
dnaN
DNA polymerase III beta subunit; Identified by sequence similarity; putative; ORF located using Blastx;COG0592.
   
 0.948
recA
Recombination protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family.
  
 0.907
MS53_0528
Identified by sequence similarity; putative; ORF located using Blastx;COG0258.
  
 0.884
nadD
Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
    0.831
nifS
Nitrogen fixation protein NifS; Identified by sequence similarity; putative; ORF located using Blastx;COG0520.
  
    0.826
nifU
Nitrogen fixation protein NifU; Identified by sequence similarity; putative; ORF located using Blastx;COG0822.
       0.818
MS53_0324
Hypothetical protein.
       0.818
rluB
Ribosomal large subunit pseudouridine synthase B; Identified by sequence similarity; putative; ORF located using Blastx;COG1187; Belongs to the pseudouridine synthase RsuA family.
       0.809
MS53_0325
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
       0.777
MS53_0323
Hypothetical protein.
       0.773
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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