Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MS53_0324Hypothetical protein. (156 aa)    
Predicted Functional Partners:
MS53_0325
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
 
     0.884
rpsJ
30S ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.
   
 
 0.880
nusA
N-utilization substance protein A; Identified by sequence similarity; putative; ORF located using Blastx;COG0195.
  
 
 0.880
nusG
Transcription antitermination protein; Participates in transcription elongation, termination and antitermination.
   
 
 0.839
nadD
Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.838
fmt
methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family.
  
  
 0.829
nifS
Nitrogen fixation protein NifS; Identified by sequence similarity; putative; ORF located using Blastx;COG0520.
  
    0.823
dinP
DNA polymerase IV; Identified by sequence similarity; putative; ORF located using Blastx;COG0389.
       0.818
nifU
Nitrogen fixation protein NifU; Identified by sequence similarity; putative; ORF located using Blastx;COG0822.
       0.818
rluB
Ribosomal large subunit pseudouridine synthase B; Identified by sequence similarity; putative; ORF located using Blastx;COG1187; Belongs to the pseudouridine synthase RsuA family.
  
    0.817
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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