STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MS53_0325Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx. (480 aa)    
Predicted Functional Partners:
MS53_0324
Hypothetical protein.
 
     0.882
nadD
Conserved hypothetical protein; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
       0.794
nifS
Nitrogen fixation protein NifS; Identified by sequence similarity; putative; ORF located using Blastx;COG0520.
       0.784
dinP
DNA polymerase IV; Identified by sequence similarity; putative; ORF located using Blastx;COG0389.
       0.778
nifU
Nitrogen fixation protein NifU; Identified by sequence similarity; putative; ORF located using Blastx;COG0822.
       0.778
lspA
Putative lipoprotein signal peptidase; This protein specifically catalyzes the removal of signal peptides from prolipoproteins; Belongs to the peptidase A8 family.
  
     0.775
rpsF
30S ribosomal protein S6; Binds together with S18 to 16S ribosomal RNA.
  
     0.774
MS53_0323
Hypothetical protein.
       0.773
rluB
Ribosomal large subunit pseudouridine synthase B; Identified by sequence similarity; putative; ORF located using Blastx;COG1187; Belongs to the pseudouridine synthase RsuA family.
       0.767
MS53_0511
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0687.
  
     0.757
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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