Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
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[Homology]
Score
ugpAABC transporter, permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1175;TC:3.A.1.1.4. (350 aa)    
Predicted Functional Partners:
MS53_0330
Putative ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
 
 
 0.989
ugpE
ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0395;TC:3.A.1.1.20.
 
 
 0.971
MS53_0329
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
 
    0.902
MS53_0105
Putative ABC transporter protein, periplasmic component; Identified by sequence similarity; putative; ORF located using GeneMark;Blastx.
  
 
 0.870
MS53_0334
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
     0.797
MS53_0102
Putative ABC transporter protein; Identified by sequence similarity; putative; ORF located using Blastx; Belongs to the ABC transporter superfamily.
 
 
 0.768
MS53_0285
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx.
 
    0.741
MS53_0383
Putative glycerol transporter subunit A; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG3839.
  
 
 0.700
ptsG
PTS system, glucose-specific IIABC component; Identified by sequence similarity; putative; ORF located using Blastx;COG1263;TC:4.A.1.1.2.
   
 
 0.584
MS53_0324
Hypothetical protein.
  
     0.570
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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