Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
MS53_0344Hypothetical protein. (156 aa)    
Predicted Functional Partners:
oppF-1
Oligopeptide ABC transporter ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;TC:3.A.1.5.1; Belongs to the ABC transporter superfamily.
       0.778
oppD-1
Oligopeptide ABC transporter, ATP-binding protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0444;TC:3.A.1.5.2; Belongs to the ABC transporter superfamily.
       0.618
oppC-1
Oligopeptide transport system permease protein; Identified by sequence similarity; putative; ORF located using Blastx;COG1173;TC:3.A.1.5.1.
       0.618
oppB-1
Oligopeptide ABC transporter permease protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG0601;TC:3.A.1.5.2.
       0.609
MS53_0349
Putative lipoprotein; Identified by sequence similarity; putative; ORF located using Blastx.
       0.607
pepF
Identified by sequence similarity; putative; ORF located using Blastx;COG1164.
       0.531
MS53_0341
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx.
       0.497
yabC
S-adenosyl-methyltransferase; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
       0.497
mraZ
Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Glimmer;Blastx;COG2001; Belongs to the MraZ family.
       0.497
Your Current Organism:
Mycoplasma synoviae
NCBI taxonomy Id: 262723
Other names: M. synoviae 53, Mycoplasma synoviae 53, Mycoplasma synoviae str. 53, Mycoplasma synoviae strain 53
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