Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MS53_0450 | MS53_0451 | MS53_0450 | MS53_0451 | Hypothetical protein. | Hypothetical protein. | 0.773 |
MS53_0450 | MS53_0456 | MS53_0450 | MS53_0456 | Hypothetical protein. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | 0.539 |
MS53_0450 | dnaG | MS53_0450 | MS53_0453 | Hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.538 |
MS53_0450 | glyS | MS53_0450 | MS53_0452 | Hypothetical protein. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.594 |
MS53_0450 | rpoD | MS53_0450 | MS53_0455 | Hypothetical protein. | DNA-directed RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.584 |
MS53_0451 | MS53_0450 | MS53_0451 | MS53_0450 | Hypothetical protein. | Hypothetical protein. | 0.773 |
MS53_0451 | MS53_0456 | MS53_0451 | MS53_0456 | Hypothetical protein. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | 0.526 |
MS53_0451 | dnaG | MS53_0451 | MS53_0453 | Hypothetical protein. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.526 |
MS53_0451 | glyS | MS53_0451 | MS53_0452 | Hypothetical protein. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.533 |
MS53_0451 | rpoD | MS53_0451 | MS53_0455 | Hypothetical protein. | DNA-directed RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.526 |
MS53_0456 | MS53_0450 | MS53_0456 | MS53_0450 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | Hypothetical protein. | 0.539 |
MS53_0456 | MS53_0451 | MS53_0456 | MS53_0451 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | Hypothetical protein. | 0.526 |
MS53_0456 | dnaG | MS53_0456 | MS53_0453 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | 0.819 |
MS53_0456 | glyS | MS53_0456 | MS53_0452 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.809 |
MS53_0456 | rpoD | MS53_0456 | MS53_0455 | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | DNA-directed RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.834 |
dnaG | MS53_0450 | MS53_0453 | MS53_0450 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein. | 0.538 |
dnaG | MS53_0451 | MS53_0453 | MS53_0451 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Hypothetical protein. | 0.526 |
dnaG | MS53_0456 | MS53_0453 | MS53_0456 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | Conserved hypothetical protein; Identified by sequence similarity; putative; ORF located using Blastx;COG0327. | 0.819 |
dnaG | glyS | MS53_0453 | MS53_0452 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | glycyl-tRNA synthetase; Catalyzes the attachment of glycine to tRNA(Gly). Belongs to the class-II aminoacyl-tRNA synthetase family. | 0.825 |
dnaG | rpoD | MS53_0453 | MS53_0455 | DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. | DNA-directed RNA polymerase sigma factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.980 |
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